Advanced Search

Indexed by SCI、CA、РЖ、PA、CSA、ZR、etc .

Volume 34 Issue 5
Oct 2023
Turn off MathJax
Article Contents
Yiwei Xu, Xiumian Hu, Zhong Han. Carbonate Ontology and Its Application for Integrating Microfacies Data. Journal of Earth Science, 2023, 34(5): 1328-1338. doi: 10.1007/s12583-023-1808-4
Citation: Yiwei Xu, Xiumian Hu, Zhong Han. Carbonate Ontology and Its Application for Integrating Microfacies Data. Journal of Earth Science, 2023, 34(5): 1328-1338. doi: 10.1007/s12583-023-1808-4

Carbonate Ontology and Its Application for Integrating Microfacies Data

doi: 10.1007/s12583-023-1808-4
More Information
  • Corresponding author: Xiumian Hu, huxm@nju.edu.cn
  • Received Date: 12 Aug 2022
  • Accepted Date: 28 Dec 2022
  • Available Online: 14 Oct 2023
  • Issue Publish Date: 30 Oct 2023
  • Carbonate rocks record essential information on changes in paleoclimate and paleoceano-graphy. Abundant geological and geochemical data of carbonate rocks have been accumulated over the past decades; however, most of the data are stored in the published literature with highly unstructured forms, and are thus difficult to reuse. The ontology is a standard knowledge model for data integration, which can promote data storage and reutilization. This study proposes a carbonate ontology that represents the concepts in carbonate microfacies. The carbonate ontology constructed by the top-down process contains 215 terms of classifications and petrographic descriptions of carbonate rocks. Furthermore, carbonate microfacies of the Cretaceous (Aptian) carbonate platform in the Betic Cordillera and Jurassic carbonate platform in Tibet provide the data from case studies for the testing and initial validation of the proposed ontology. The carbonate ontology is under continuous expansion following the bottom-up approach and open access on the website of the deep-time digital Earth (DDE) program.

     

  • Conflict of Interest
    The authors declare that they have no conflict of interest.
  • loading
  • Abel, M., Goldberg, K., De Ros, L. F., 2012. Ontology-Based Rock Description and Interpretation. In: Perrin, M., Rainaud, J. -F., eds., Shared Earth Modeling: Knowledge Driven Solutions for Building and Managing Subsurface 3D Geological Models. Editions Technips, Paris, 261–278
    Abel, M., Silva, L. A. L., De Ros, L. F., et al., 2004. PetroGrapher: Managing Petrographic Data and Knowledge Using an Intelligent Database Application. Expert Systems with Applications, 26: 9–18 doi: 10.1016/S0957-4174(03)00104-0
    Abu-Salih, B., 2020. Domain-Specific Knowledge Graphs: A Survey. arXiv: 2011.00235. https://arxiv.org/abs/2011.00235
    Aliyu, I., Kana, A. F. D., Aliyue, S., 2020. Development of Knowledge Graph for University Courses Management. International Journal of Education and Management Engineering (IJEME), 10(2): 1–10
    Amel, H., Jafarian, A., Husinec, A., et al., 2015. Microfacies, Depositional Environment and Diagenetic Evolution Controls on the Reservoir Quality of the Permian Upper Dalan Formation, Kish Gas Field, Zagros Basin. Marine and Petroleum Geology, 67: 57–71. https://doi.org/10.1016/j.marpetgeo.2015.04.012
    Arp, R., Smith, B., Spear, A. D., 2015. Building Ontologies with Basic Formal Ontology. The MIT Press, Cambridge
    Ashburner, M., Ball, C. A., Blake, J. A., et al., 2000. Gene Ontology: Tool for the Unification of Biology. Nature Genetics, 25(1): 25–29. https://doi.org/10.1038/75556
    Borst, W. N., 1997. Construction of Engineering Ontologies for Knowledge Sharing and Reuse: [Dissertation]. University of Twente, Enschede
    Burchette, T. P., 2012. Carbonate Rocks and Petroleum Reservoirs: A Geological Perspective from the Industry. In: Garland, J., Neilson, J., Laubach, S. E., eds., Advances in Carbonate Exploration and Reservoir Analysis. Geological Society London Special Publications, London
    Buttigieg, P. L., Mungall, C., Rueda, C., et al., 2018. SWEET Ontology Suite v3.0. 0: Development, Alignments and Use Cases. Abstract from American Association of Geographers 2018, New Orleans
    Cicconeto, F., 2021. GeoReservoir: An Ontology for Deep-Marine Depositional System Description: [Dissertation]. Universidade Federal do Rio Grande do Sul, Rio Grande do Sul
    Cicconeto, F., Vieira, L. V., Abel, M., et al., 2020. A Spatial Relation Ontology for Deep-Water Depositional System Description in Geology. ONTOBRAS, 35–47
    Cosgrove, G. I. E., Colombera, L., Mountney, N. P., 2021a. A Database of Aeolian Sedimentary Architecture for the Characterization of Modern and Ancient Sedimentary Systems. Marine and Petroleum Geology, 127: 104983. https://doi.org/10.1016/j.marpetgeo.2021.104983
    Cosgrove, G. I. E., Colombera, L., Mountney, N. P., 2021b. Quantitative Analysis of the Sedimentary Architecture of Eolian Successions Developed under Icehouse and Greenhouse Climatic Conditions. GSA Bulletin, 133(11/12): 2625–2644. https://doi.org/10.1130/b35918.1
    Cox, S. J. D., Gahegan, M., 2016. Time Ontology Extended for Non-Gregorian Calendar Applications. Semantic Web, 7(2): 201–209. https://doi.org/10.3233/sw-150187
    DiGiuseppe, N., Pouchard, L. C., Noy, N. F., 2014. SWEET Ontology Coverage for Earth System Sciences. Earth Science Informatics, 7(4): 249–264. https://doi.org/10.1007/s12145-013-0143-1
    Dunham, R. J., 1962. Classification of Carbonate Rocks According to Depo-sitional Texture. In: Ham, W. E., eds., Classification of Carbonate Rocks, The American Association of Petroleum Geologists, Tulsa. 108–121
    Embry, A., Klovan, J. E., 1971. A Late Devonian Reef Tract on Northeastern Banks Island, N. W. T. Bulletin of Canadian Petroleum Geology, 19: 730–781
    Farazi, F., Salamanca, M., Mosbach, S., et al., 2020. Knowledge Graph Approach to Combustion Chemistry and Interoperability. ACS Omega, 5(29): 18342–18348. https://doi.org/10.1021/acsomega.0c02055
    Flügel, E., 2010. Microfacies of Carbonate Rocks: Analysis, Interpretation and Application (Second Edition), Springer-Verlag, Berlin
    Folk, R. L. F., 1959. Practical Petrographic Classification of Limestones. AAPG Bulletin, 43(1): 1–38. https://doi.org/10.1306/0bda5c36-16bd-11d7-8645000102c1865d
    Folk, R. L., 1980. Petrology of Sedimentary Rocks. Hemphill Publishing Co., Austin
    Friedman, G. M., 1965. Terminology of Crystallization Textures and Fabrics in Sedimentary Rocks. SEPM Journal of Sedimentary Research, 35: 643–655. https://doi.org/10.1306/74d7131b-2b21-11d7-8648000102c1865d
    Friedman, G. M., 1965. Terminology of Recrystallization Textures and Fabrics in Sedimentary Rocks. Journal of Sedimentary Research, 35: 643–655
    Gil, Y., Garijo, D., Ratnakar, V., et al., 2017. A Controlled Crowdsourcing Approach for Practical Ontology Extensions and Metadata Annotations. International Semantic Web Conference. Springer, Cham. https://doi.org/10.1007/978-3-319-68204-4_24
    Gruber, T. R., 1993. A Translation Approach to Portable Ontology Specifications. Knowledge Acquisition, 5(2): 199–220. https://doi.org/10.1006/knac.1993.1008
    Gutierrez, C., Sequeda, J. F., 2021. Knowledge Graphs. Communications of the ACM, 64(3): 96–104. https://doi.org/10.1145/3418294
    Han, Z., Hu, X. M., Kemp, D. B., et al., 2018. Carbonate-Platform Response to the Toarcian Oceanic Anoxic Event in the Southern Hemisphere: Implications for Climatic Change and Biotic Platform Demise. Earth and Planetary Science Letters, 489: 59–71. https://doi.org/10.1016/j.epsl.2018.02.017
    Han, Z., Hu, X. M., Li, J., et al., 2016. Jurassic Carbonate Microfacies and Relative Sea-Level Changes in the Tethys Himalaya (Southern Tibet). Palaeogeography, Palaeoclimatology, Palaeoecology, 456: 1–20. https://doi.org/10.1016/j.palaeo.2016.05.012
    Haussmann, S., Seneviratne, O., Chen, Y., et al., 2019. FoodKG: A Semantics-Driven Knowledge Graph for Food Recommendation. Lecture Notes in Computer Science. Springer International Publishing, Cham. https://doi.org/10.1007/978-3-030-30796-7_10
    Hu, Z. C., Ren, H. L., Jiang, J. L., et al., 2023. Corpus of Carbonate Platforms with Lexical Annotations for Named Entity Recognition. Computer Modeling in Engineering & Sciences, 135(1): 91–108. https://doi.org/10.32604/cmes.2022.022268
    James, N., Jones, B., 2015. Origin of Carbonate Sedimentary Rocks. Wiley, London. 446
    Jerram, D. A., 2001. Visual Comparators for Degree of Grain-Size Sorting in Two and Three-Dimensions. Computers & Geosciences, 27(4): 485–492. https://doi.org/10.1016/S0098-3004(00)00077-7
    Jiang, J. X., Hu, X. M., Li, J., et al., 2021. Discovery of the Paleocene-Eocene Thermal Maximum in Shallow-Marine Sediments of the Xigaze Forearc Basin, Tibet: A Record of Enhanced Extreme Precipitation and Siliciclastic Sediment Flux. Palaeogeography, Palaeoclimatology, Palaeoecology, 562: 110095. https://doi.org/10.1016/j.palaeo.2020.110095
    Keet, C. M., 2018. An Introduction to Ontology Engineering. Cape Town. College Publications, Paris
    Khider, D., Emile-Geay, J., McKay, N. P., et al., 2019. PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data. Paleoceanography and Paleoclimatology, 34(10): 1570–1596. https://doi.org/10.1029/2019pa003632
    Kindler, P., Wilson, M. E., 2010. Carbonate Grain Associations: Their Use and Environmental Significance, a Brief Review. In: Mutti, M., Piller, W. E., Befzler, C., eds., Carbonate Systems during the Oligocene-Miocene Climatic Transition, Wiley-Blackwell, Malden, 35–47
    Klemme, H. D., Ulmishek, G. F., 1991. Effective Petroleum Source Rocks of the World: Stratigraphic Distribution and Controlling Depositional Factors (1). AAPG Bulletin, 75: 1809–1851. https://doi.org/10.1306/0c9b2a47-1710-11d7-8645000102c1865d
    Kuznetsov, V. G., 2000. Some Features of the Evolution of Carbonate Accumulation in the Earth's History: Communication 1. Evolution of the Intensity, Mechanism, and Setting of Carbonate Accumulation. Lithology and Mineral Resources, 35(1): 32–46. https://doi.org/10.1007/bf02788283
    Li, J., Hu, X. M., Garzanti, E., et al., 2021. Climate-Driven Hydrological Change and Carbonate Platform Demise Induced by the Paleocene–Eocene Thermal Maximum (Southern Pyrenees). Palaeogeography, Palaeoclimatology, Palaeoecology, 567: 110250. https://doi.org/10.1016/j.palaeo.2021.110250
    Lokier, S. W., Al Junaibi, M., 2016. The Petrographic Description of Carbonate Facies: Are We all Speaking the Same Language? Sedimentology, 63(7): 1843–1885. https://doi.org/10.1111/sed.12293
    Long, J. W., Chen, Z. P., He, W. B., et al., 2020. An Integrated Framework of Deep Learning and Knowledge Graph for Prediction of Stock Price Trend: An Application in Chinese Stock Exchange Market. Applied Soft Computing, 91: 106205. https://doi.org/10.1016/j.asoc.2020.106205
    Ma, X. G., Ma, C., Wang, C. B., 2020. A New Structure for Representing and Tracking Version Information in a Deep Time Knowledge Graph. Computers & Geosciences, 145: 104620. https://doi.org/10.1016/j.cageo.2020.104620
    Mazzullo, S. J., Chilingarian, G. V., Bissell, H. J., 1992. Carbonate Rock Classifications. In: Chilingarian, G. V., Mazzullo, S. J., Rieke, H. H., eds., Carbonate Reservoir Characterization: A Geologic-Engineering Analysis. Elsevier, Amsterdam
    Michel, J., Borgomano, J., Reijmer, J. J. G., 2018. Heterozoan Carbonates: When, Where and Why? A Synthesis on Parameters Controlling Carbonate Production and Occurrences. Earth-Science Reviews, 182: 50–67. https://doi.org/10.1016/j.earscirev.2018.05.003
    Nabawy, B. S., Rashed, M. A., Mansour, A. S., et al., 2018. Petrophysical and Microfacies Analysis as a Tool for Reservoir Rock Typing and Modeling: Rudeis Formation, Off-Shore October Oil Field, Sinai. Marine and Petroleum Geology, 97: 260–276. https://doi.org/10.1016/j.marpetgeo.2018.07.011
    Nieto, L. M., Reolid, M., Rodríguez-Tovar, F. J., et al., 2018. An Integrated Analysis (Microfacies and Ichnology) of a Shallow Carbonate-Platform Succession: Upper Aptian, Lower Cretaceous, Betic Cordillera. Facies, 64(1): 4. https://doi.org/10.1007/s10347-017-0515-y
    Noy, N. F., McGuinness, D. L., 2001. Ontology Development 101: A Guide to Creating Your First Ontology. http://www.lsi.upc.edu/~bejar/aia/aia-web/ontology101.pdf
    Pettijohn, F., Potter, P. E., Siever, R., 1972. Sand and Sandstone. Springer-Verlag, New York. 553
    Rainaud, J. F., 2005. A Short History of the Last 15 Year's Quest for It Interoperability in the Petroleum E & P Industry. Oil & Gas Science and Technology, 60(4): 597–605. https://doi.org/10.2516/ogst:2005042
    Raskin, R. G., 2010. SWEET 2.1 Ontologies. 2010 AGU Fall Meeting, 13–17 December, San Francisco
    Reijmer, J., 2021. Marine Carbonate Factories: Review and Update. Sedimentology, 68(5): 1729–1796
    Richard, S. M., CGI Interoperability Working Group, 2007. Geosciml–A Gml Application for Geoscience Information Interchange. In: DIGITAL Mapping Techniques'06, 2006, Columbus. U. S. Geological Survey, Reston
    Ronov, A. B., 1982. The Earth's Sedimentary Shell (Quantitative Patterns of Its Structure, Compositions, and Evolution). International Geology Review, 24(12): 1365–1388. https://doi.org/10.1080/00206818209467198
    Schlager, W., 2005. Carbonate Sedimentology and Sequence Stratigraphy. SEPM, Oklahoma
    Simons, B., Duffy, T., Boisvert, E., et al., 2006. GeoSciML: Enabling the Exchange of Geological Map Data, AESC, Melbourne
    Studer, R., Benjamins, V. R., Fensel, D., 1998. Knowledge Engineering: Principles and Methods. Data & Knowledge Engineering, 25(1/2): 161–197. https://doi.org/10.1016/s0169-023x(97)00056-6
    Tucker, M. E., 2001. Sedimentary Petrology: An Introduction to the Origin of Sedimentary Rocks. Blackwell Science, Oxford
    Tucker, M. E., Wright, V. P., 1990. Carbonate Sedimentology. Blackwell Science, Oxford
    Wang, C. S., Hazen, R. M., Cheng, Q. M., et al., 2021. The Deep-Time Digital Earth Program: Data-Driven Discovery in Geosciences. National Science Review, 8(9): nwab027. https://doi.org/10.1093/nsr/nwab027
    Wentworth, C. K., 1922. A Scale of Grade and Class Terms for Clastic Sediments. The Journal of Geology, 30(5): 377–392. https://doi.org/10.1086/622910
    Xu, Y. W., Hu, X. M., Garzanti, E., et al., 2022. Mid-Cretaceous Thick Carbonate Accumulation in Northern Lhasa (Tibet): Eustatic vs. Tectonic Control? GSA Bulletin, 134(1/2): 389–404. https://doi.org/10.1130/b35930.1
    Yan, H. H., Yang, J., Wan, J. F., 2020. KnowIME: A System to Construct a Knowledge Graph for Intelligent Manufacturing Equipment. IEEE Access, 8: 41805–41813. https://doi.org/10.1109/access.2020.2977136
    Yuan, W. J., Yang, L., Yang, Q., et al., 2022. Extracting Spatio-Temporal Information from Chinese Archaeological Site Text. ISPRS International Journal of Geo-Information, 11(3): 175. https://doi.org/10.3390/ijgi11030175
    Zhou, C. H., Wang, H., Wang, C. S., et al., 2021. Geoscience Knowledge Graph in the Big Data Era. Science China Earth Sciences, 64(7): 1105–1114. https://doi.org/10.1007/s11430-020-9750-4
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Figures(7)  / Tables(1)

    Article Metrics

    Article views(251) PDF downloads(42) Cited by()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return